| Protein ZmTRAF35 | |
|---|---|
|
ZmTRAF35 is a protein in the TRAF family.
|
|
| Information | |
| Coreg Name: | ZmTRAF35 |
| Species: | Maize |
| Coreg Family: | TRAF |
| Gene Name(Synonym): | MAB10 |
| Uniprot ID: | A0A1D6PDQ1 |
Protein ZmTRAF35
ZmTRAF35 is a protein in the TRAF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF00651 | PF00917 | |
| Zm00001eb065610_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d001767 | DAPseq |  |
sequence | fimo | position |
| Zm00001d001767 | DAPseq |  |
sequence | fimo | position |
| Zm00001d001767 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d001767 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmTRAF35 is the regulator
Interactions where ZmTRAF35 is the target
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Zm00001eb065610_T001 from maize genome v5
Amino Acid Sequence
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MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
MAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEYVSLSLYLHDW
VAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTNEVRVVATAAA
AMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIEDMEPLVFKAL
LYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHRCHALKKVCFH
FLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00917 |
|
| PF00651 |
|
| PF00651 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CTTTTTCGTTTTGCCTTCCCTTTCC...
CTTTTTCGTTTTGCCTTCCCTTTCCAGTTTCCGCGCCGCCAGTTCGTGCCAAACCCTACTCCAAAATGGAGTCCAAAATGCAGGGAGGGATTGTCATGGCTGGCGGCGGCAAGCCGTCCTGGTCTGCCTCGGCCATCGTCGCCACTGTCGCGAGTGGGTACCACATCCTCAGGATCGATGGCTACTCCCACACCATGGGGACCCCCACAGGAGAGTACATCGCGTCCCTCCCGTTCACCGTGGGCGGCCATCGCTGGCACATTCGCTACTACCCCAACGGCAGGAGCTCGGAGACCAAAGAGTACGTCTCGCTTTCTCTCTATCTCCACGACTGGGTCGCTGAGACAGTGAAGGCGCGGTTCAAGTTCCGTTTCGTCGGTGACGTGGCGGAGCAGCCGTTGATACTGGGAGGACTGCATAGCTTTGATAATATTGACAACAATTGGGGGCGCCCCGAGTTCATCAAAAGGAAAGATTTGGAAGAGTCGAAGCATCTCCTAGACGATTCTTTTTCCATTCGGTGCGATGTGGTCGTGCCCACCAACGAAGTCCGCGTGGTAGCCACTGCTGCGGCTGCTATGGTTTCCGTGCCCCCATCTGACCTGCACCAGCATCTCGGCATTCTCCTGCTGACCGAGAAGGGCGCCGATGTGGTGTTCGACGTCGCCGGTGAGACGTTCGCCGCACACCGGTGCGTGCTCGCAGCCCGTTCGCCTGTCTTCAGTGCAGATCTCTTTGGTGCGATGGAAGAGGGGGGCCACACCGGAGGCGTGGTGCGCATAGAGGACATGGAACCTCTGGTGTTCAAGGCATTGCTCTACTTCCTTTACACCGACTTGTTAGAGACAGAGACGATGAAACAAGGTGAAGACGGAGACGATGAAGACGTTTTGTGTCAGCACCTACTGGTCGCTGCGGACAAATACAACTTGGAGAGGCTGAAATTGCTATGTGAAAAGAAGCTGTGTGAGTGCATCCATGTGGGCACGATAGCAACCATCCTGGCGCTCGCTGAGCAACACCGCTGCCATGCACTGAAGAAGGTCTGCTTCCATTTTCTCAGCTCTCCTGCAAATTTGAGGGCAGTCGCCGCCACTGACGGCTTTGAGCATCTGAGCAGAAGCTGCCCCTCTGTTATGGAGGAGTTGGTTGTCATGCTCAGCAACTTGGTGTAGAAAACTGCACAGTAGTTGTGCATCCTAGGAGATTCTCAATCTTTTGGTGCTTTTGCCAGTTGACTTGACTGCGTATGTGCCGCTCTCCACCAATTCGCAGCGGGTGATTTTGTTAGCTGCTAGCTTTGAATATCCACAACAAGTCCGTCTATGTGCTTAATGTTTAATTCTCAGAAGTTGGAATGCACTATAGCTCTTGCTTTCTTATTAAGTACTACTCTATCCAACCACGTGAATTAGTCGTCGTTTTAGATTTATCTTAAGTCAAACTATTTAAACTTTGGCC
GRMZM2G154437_T01 from maize genome v3
Amino Acid Sequence
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MESKMQGGIVMAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEY
VSLSLYLHDWVAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTN
EVRVVATAAAAMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIE
DMEPLVFKALLYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHR
CHALKKVCFHFLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
Nucleotide Sequence
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TTTCCAGTTTCCGCGCCGCCAGTTC...
TTTCCAGTTTCCGCGCCGCCAGTTCGTGCCAAACCCTACTCCAAAATGGAGTCCAAAATGCAGGGAGGGATTGTCATGGCTGGCGGCGGCAAGCCGTCCTGGTCTGCCTCGGCCATCGTCGCCACTGTCGCGAGTGGGTACCACATCCTCAGGATCGATGGCTACTCCCACACCATGGGGACCCCCACAGGAGAGTACATCGCGTCCCTCCCGTTCACCGTGGGCGGCCATCGCTGGCACATTCGCTACTACCCCAACGGCAGGAGCTCGGAGACCAAAGAGTACGTCTCGCTTTCTCTCTATCTCCACGACTGGGTCGCTGAGACAGTGAAGGCGCGGTTCAAGTTCCGTTTCGTCGGTGACGTGGCGGAGCAGCCGTTGATACTGGGAGGACTGCATAGCTTTGATAATATTGACAACAATTGGGGGCGCCCCGAGTTCATCAAAAGGAAAGATTTGGAAGAGTCGAAGCATCTCCTAGACGATTCTTTTTCCATTCGGTGCGATGTGGTCGTGCCCACCAACGAAGTCCGCGTGGTAGCCACTGCTGCGGCTGCTATGGTTTCCGTGCCCCCATCTGACCTGCACCAGCATCTCGGCATTCTCCTGCTGACCGAGAAGGGCGCCGATGTGGTGTTCGACGTCGCCGGTGAGACGTTCGCCGCACACCGGTGCGTGCTCGCAGCCCGTTCGCCTGTCTTCAGTGCAGATCTCTTTGGTGCGATGGAAGAGGGGGGCCACACCGGAGGCGTGGTGCGCATAGAGGACATGGAACCTCTGGTGTTCAAGGCATTGCTCTACTTCCTTTACACCGACTTGTTAGAGACAGAGACGATGAAACAAGGTGAAGACGGAGACGATGAAGACGTTTTGTGTCAGCACCTACTGGTCGCTGCGGACAAATACAACTTGGAGAGGCTGAAATTGCTATGTGAAAAGAAGCTGTGTGAGTGCATCCATGTGGGCACGATAGCAACCATCCTGGCGCTCGCTGAGCAACACCGCTGCCATGCACTGAAGAAGGTCTGCTTCCATTTTCTCAGCTCTCCTGCAAATTTGAGGGCAGTCGCCGCCACTGACGGCTTTGAGCATCTGAGCAGAAGCTGCCCCTCTGTTATGGAGGAGTTGGTTGTCATGCTCAGCAACTTGGTGTAGAAAACTGCACAGTAGTTGTGCATCCTAGGAGATTCTCAATCTTTTGGTGCTTTTGCCAGTTGACTTGACTGCGTATGTGCCGCTCTCCACCAATTCGCAGCGGGTGATTTTGTTAGCTGCTAGCTTTGAATATCCACAACAAGTCCGTCTATGTGCTTAATGTTTAATTCTCAGAAGTTGGAATGCACTATAGCTCTTGCTTTCTTATTAA
GRMZM2G154437_T02 from maize genome v3
Amino Acid Sequence
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MESKMQGGIVMAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEY
VSLSLYLHDWVAETVKARFKFRFVGDVAEQPLILGGLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADL
FGAMEEGGHTGGVVRIEDMEPLVFKALLYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCEC
IHVGTIATILALAEQHRCHALKKVCFHFLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
Nucleotide Sequence
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CAAACCCTACTCCAAAATGGAGTCC...
CAAACCCTACTCCAAAATGGAGTCCAAAATGCAGGGAGGGATTGTCATGGCTGGCGGCGGCAAGCCGTCCTGGTCTGCCTCGGCCATCGTCGCCACTGTCGCGAGTGGGTACCACATCCTCAGGATCGATGGCTACTCCCACACCATGGGGACCCCCACAGGAGAGTACATCGCGTCCCTCCCGTTCACCGTGGGCGGCCATCGCTGGCACATTCGCTACTACCCCAACGGCAGGAGCTCGGAGACCAAAGAGTACGTCTCGCTTTCTCTCTATCTCCACGACTGGGTCGCTGAGACAGTGAAGGCGCGGTTCAAGTTCCGTTTCGTCGGTGACGTGGCGGAGCAGCCGTTGATACTGGGAGGACTGCACCAGCATCTCGGCATTCTCCTGCTGACCGAGAAGGGCGCCGATGTGGTGTTCGACGTCGCCGGTGAGACGTTCGCCGCACACCGGTGCGTGCTCGCAGCCCGTTCGCCTGTCTTCAGTGCAGATCTCTTTGGTGCGATGGAAGAGGGGGGCCACACCGGAGGCGTGGTGCGCATAGAGGACATGGAACCTCTGGTGTTCAAGGCATTGCTCTACTTCCTTTACACCGACTTGTTAGAGACAGAGACGATGAAACAAGGTGAAGACGGAGACGATGAAGACGTTTTGTGTCAGCACCTACTGGTCGCTGCGGACAAATACAACTTGGAGAGGCTGAAATTGCTATGTGAAAAGAAGCTGTGTGAGTGCATCCATGTGGGCACGATAGCAACCATCCTGGCGCTCGCTGAGCAACACCGCTGCCATGCACTGAAGAAGGTCTGCTTCCATTTTCTCAGCTCTCCTGCAAATTTGAGGGCAGTCGCCGCCACTGACGGCTTTGAGCATCTGAGCAGAAGCTGCCCCTCTGTTATGGAGGAGTTGGTTGTCATGCTCAGCAACTTGGTGTAGAAAACTGCACAGTAGTTGTGCATCCTAGGAGATTCTCAATCTTTTGGTGCTTTTGCCAGTTGACTTGACTGCGTATGTGCCGCTCTCCACCAATTCGCAGCGGGTGATTTTGTTAGCTGCTAGCTTTGAATATCCACAACAAGTCCGTCTATGTGCTTAATGTTTAATTCTCAGAAGTTGGAATGCACTAT
Zm00001d001767_T001 from maize genome v4
Amino Acid Sequence
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MESKMQGGIVMAGGGKPSWSASAIVATVASGYHILRIDGYSHTMGTPTGEYIASLPFTVGGHRWHIRYYPNGRSSETKEY
VSLSLYLHDWVAETVKARFKFRFVGDVAEQPLILGGLHSFDNIDNNWGRPEFIKRKDLEESKHLLDDSFSIRCDVVVPTN
EVRVVATAAAAMVSVPPSDLHQHLGILLLTEKGADVVFDVAGETFAAHRCVLAARSPVFSADLFGAMEEGGHTGGVVRIE
DMEPLVFKALLYFLYTDLLETETMKQGEDGDDEDVLCQHLLVAADKYNLERLKLLCEKKLCECIHVGTIATILALAEQHR
CHALKKVCFHFLSSPANLRAVAATDGFEHLSRSCPSVMEELVVMLSNLV
Nucleotide Sequence
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ATGGAGTCCAAAATGCAGGGAGGGA...
ATGGAGTCCAAAATGCAGGGAGGGATTGTCATGGCTGGCGGCGGCAAGCCGTCCTGGTCTGCCTCGGCCATCGTCGCCACTGTCGCGAGTGGGTACCACATCCTCAGGATCGATGGCTACTCCCACACCATGGGGACCCCCACAGGAGAGTACATCGCGTCCCTCCCGTTCACCGTGGGCGGCCATCGCTGGCACATTCGCTACTACCCCAACGGCAGGAGCTCGGAGACCAAAGAGTACGTCTCGCTTTCTCTCTATCTCCACGACTGGGTCGCTGAGACAGTGAAGGCGCGGTTCAAGTTCCGTTTCGTCGGTGACGTGGCGGAGCAGCCGTTGATACTGGGAGGACTGCATAGCTTTGATAATATTGACAACAATTGGGGGCGCCCCGAGTTCATCAAAAGGAAAGATTTGGAAGAGTCGAAGCATCTCCTAGACGATTCTTTTTCCATTCGGTGCGATGTGGTCGTGCCCACCAACGAAGTCCGCGTGGTAGCCACTGCTGCGGCTGCTATGGTTTCCGTGCCCCCATCTGACCTGCACCAGCATCTCGGCATTCTCCTGCTGACCGAGAAGGGCGCCGATGTGGTGTTCGACGTCGCCGGTGAGACGTTCGCCGCACACCGGTGCGTGCTCGCAGCCCGTTCGCCTGTCTTCAGTGCAGATCTCTTTGGTGCGATGGAAGAGGGGGGCCACACCGGAGGCGTGGTGCGCATAGAGGACATGGAACCTCTGGTGTTCAAGGCATTGCTCTACTTCCTTTACACCGACTTGTTAGAGACAGAGACGATGAAACAAGGTGAAGACGGAGACGATGAAGACGTTTTGTGTCAGCACCTACTGGTCGCTGCGGACAAATACAACTTGGAGAGGCTGAAATTGCTATGTGAAAAGAAGCTGTGTGAGTGCATCCATGTGGGCACGATAGCAACCATCCTGGCGCTCGCTGAGCAACACCGCTGCCATGCACTGAAGAAGGTCTGCTTCCATTTTCTCAGCTCTCCTGCAAATTTGAGGGCAGTCGCCGCCACTGACGGCTTTGAGCATCTGAGCAGAAGCTGCCCCTCTGTTATGGAGGAGTTGGTTGTCATGCTCAGCAACTTGGTGTAG
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